Manual

PolarProtPred predicts the subcellular localization of transmembrane proteins in epithelial cells. 

Jobs can be submitted at http://polarprotpred.ttk.hu/job/submit. Sequences can be submitted with one letter amino acid format in FASTA format (1). Currently two prediction modes are available: apical/basolateral localization (if the submitted sequence(s) localize into polarized cells) and apical/basolateral/other (for all transmembrane proteins) (2).

Optionally, users can select a job name so they can access their earlier predictions more easily (3). E-mail notification is also available (4).

When the submitted job is finished, a five-panel window is produced by the PolarProtPred web server. Results are stored on our server and can be accessed later. The first panel contains the predictions results (1). If the sequence was found in the PolarProtDB, it is also linked on the main page (2). The second panel displays the submitted sequence (3). Panel 3-5 shows the predicted transmembrane/disordered/low-complexity regions (4).